Monday, October 27, 2008

A Plethora, Nay, Dare I Say, A Veritable Cornucopia

Holy jeebus, I finally got around to looking at what Pubmed sent me for "What's new for 'Single Molecule'" last week, and there is too much there to even begin to consider reading.  Rather than try to read all of this and summarize, I just want to point out what look like some highlights based on the abstracts.  When I get a chance to read some of this later on, I'll try to fill in the details:

Force spectroscopy
  • Theory, analysis, and interpretation of single-molecule force spectroscopy experiments: Olga Dudko's group updates their highly important theoretical work on interpreting non-equilibrium single molecule folding and unfolding experiments with this new paper.  From people who read the pre-print, I understand the functions they give in this paper give much more robust fits than the ones in their previous work.
  • Length of Time's Arrow: Gavin Crooks (of the Crooks Fluctuation Theorem fame) has a paper in Phys Rev Lett which uses the reversible folding and unfolding of RNA molecules to investigate fundamental questions of why time runs in one direction.  That is some seriously hardcore physics, and one of the rare few examples of "biology in the service of physics" rather than "physics in the service of biology."  I hope I haven't forgotten too much stat mech to make heads or tails of this, but I'm going to give it my best.
  • Remeasuring the Double Helix: While not strictly about force spectroscopy (nor actually single molecule, for that matter), this paper from a group here at Stanford uses small angle X-ray scattering (SAXS) to investigate the bending behavior of small DNA molecules, a very hot topic.  This relates to single molecule force spectroscopy because some experiments show the apparent behavior of short molecules differing markedly from the behavior seen in single molecule pulling experiments of longer molecules.  This work supports the view of Jon Widom's work (among others) showing much higher flexibility than expected for short double stranded DNAs.
Fluorescence
UPDATE: A reader corrected me on Vinod Subramaniam's first name; I was thinking of the late great Vijay Pandharipande, from whom I took QM in grad school.

2 comments:

Ankur said...

He's Vinod Subramaniam and not Vijay!!

Matt Gordon said...

Oops! Vijay Pandharipande was my QM prof in grad school, I got the names mixed up. Thanks for alerting me, corrected!